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CN09_32190 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_32190" - ABC transporter permease in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_32190ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)    
Predicted Functional Partners:
CN09_32185
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
 
  0.986
CN09_32180
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (346 aa)
 
   
  0.985
CN09_32195
Sorbosone dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GMC oxidoreductase family (564 aa)
 
          0.954
CN09_33370
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
  0.912
CN09_32165
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system (363 aa)
 
 
  0.901
CN09_12760
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
  0.865
CN09_23100
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
 
  0.864
CN09_20690
Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
  0.806
CN09_18875
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (342 aa)
 
   
  0.801
CN09_30855
Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (289 aa)
 
  0.788
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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