STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_32225LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (312 aa)    
Predicted Functional Partners:
CN09_32235
Muconolactone Delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the muconolactone Delta-isomerase family
 
   
 0.972
CN09_32230
Muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family
 
   
 0.968
CN09_32240
mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.962
CN09_32250
Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.955
CN09_32245
Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.939
CN09_32255
NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.938
benD
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family
 
   
 0.936
CN09_32265
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.857
CN09_24010
3-oxoadipate enol-lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.597
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.472
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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