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CN09_32245 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_32245" - Benzene 1,2-dioxygenase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_32245Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (452 aa)    
Predicted Functional Partners:
CN09_32250
Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (162 aa)
 
  0.998
benD
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (262 aa)
   
  0.985
CN09_32255
NADH oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
 
   
  0.985
CN09_32240
mRNA 3’-end processing factor; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
 
   
  0.975
CN09_32230
Muconate cycloisomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family (383 aa)
 
   
  0.966
CN09_32235
Muconolactone Delta-isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the muconolactone Delta-isomerase family (96 aa)
 
   
  0.966
CN09_32265
Major facilitator transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (443 aa)
 
   
  0.959
CN09_32225
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
 
     
  0.939
CN09_00020
Dioxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (321 aa)
   
   
  0.763
CN09_24010
3-oxoadipate enol-lactonase; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
 
     
  0.716
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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