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CN09_32275 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_32275" - 5-carboxymethyl-2-hydroxymuconate isomerase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_322755-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (300 aa)    
Predicted Functional Partners:
CN09_01295
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (243 aa)
          0.612
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP (520 aa)
              0.565
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate (453 aa)
   
   
  0.555
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
   
   
  0.503
CN09_02595
Fuconate dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (425 aa)
 
     
  0.497
CN09_01265
Mandelate racemase; Derived by automated computational analysis using gene prediction method- Protein Homology (370 aa)
 
     
  0.484
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
   
        0.449
CN09_16370
Gluconolaconase; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
        0.445
CN09_01235
Amidohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (278 aa)
 
          0.445
CN09_26505
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (340 aa)
 
 
  0.443
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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