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CN09_32290 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_32290" - 3-oxoacyl-ACP reductase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_322903-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)    
Predicted Functional Partners:
CN09_32295
Dioxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (331 aa)
     
 
  0.780
CN09_24645
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (251 aa)
 
          0.701
CN09_31695
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (253 aa)
   
          0.600
CN09_32285
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (367 aa)
   
   
  0.598
CN09_32305
Hydroxyglutarate oxidase; Catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; Derived by automated computational analysis using gene prediction method- Protein Homology (397 aa)
         
  0.597
CN09_32300
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (235 aa)
              0.539
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
   
 
  0.527
CN09_27955
Sugar dehydrogenase; Converts glucose to D-glucono-1,5 lactone; Derived by automated computational analysis using gene prediction method- Protein Homology (251 aa)
 
          0.447
cysS
Cysteine--tRNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family (463 aa)
 
 
 
  0.446
CN09_34070
2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family (333 aa)
 
 
 
  0.423
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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