STRINGSTRING
CN09_32350 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_32350" - Aldehyde dehydrogenase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_32350Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (478 aa)    
Predicted Functional Partners:
CN09_32345
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (459 aa)
   
   
  0.620
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
   
 
  0.512
glnH
Glutamine ABC transporter substrate-bindnig protein; Similar to periplasmic-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method- Protein Homology (248 aa)
   
 
  0.512
CN09_23555
Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (972 aa)
   
   
  0.499
CN09_32340
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (387 aa)
   
   
  0.479
CN09_24995
Acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology (685 aa)
   
 
  0.421
putA
Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family (1234 aa)
 
 
0.420
CN09_32365
Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method- Protein Homology (240 aa)
   
   
  0.416
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (5%) [HD]