STRINGSTRING
CN09_32375 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_32375" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_32375Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (213 aa)    
Predicted Functional Partners:
CN09_21660
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (212 aa)
   
          0.778
CN09_31885
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (229 aa)
   
          0.773
CN09_26530
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (221 aa)
   
          0.742
CN09_26425
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (261 aa)
   
          0.709
CN09_07685
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)
   
          0.688
CN09_32370
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)
              0.602
CN09_26910
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (254 aa)
 
     
  0.547
CN09_32680
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (264 aa)
 
     
  0.535
CN09_07580
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (248 aa)
 
     
  0.526
CN09_19930
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (254 aa)
 
     
  0.478
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (5%) [HD]