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CN09_32560 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_32560" - Nitrate ABC transporter ATP-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_32560Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (266 aa)    
Predicted Functional Partners:
CN09_32555
Bicarbonate ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
   
  0.989
CN09_32575
Nitrate reductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family (885 aa)
 
     
  0.979
CN09_32565
Nitrite reductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family (816 aa)
 
     
  0.972
CN09_32570
tRNA-(Guanine-N1)-methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (111 aa)
 
          0.964
CN09_32550
Bicarbonate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (432 aa)
   
  0.960
CN09_32545
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (423 aa)
   
  0.921
CN09_32540
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology (195 aa)
 
     
  0.881
CN09_28735
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method- Protein Homology (154 aa)
              0.744
CN09_07700
Sulfite reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (557 aa)
         
  0.732
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
              0.699
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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