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CN09_32775 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_32775" - Crp/Fnr family transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
CN09_32775Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (238 aa)    
Predicted Functional Partners:
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
   
   
  0.899
CN09_29580
Protein ndvB; Derived by automated computational analysis using gene prediction method- Protein Homology (2836 aa)
 
          0.699
CN09_16365
Photosystem reaction center subunit H; Derived by automated computational analysis using gene prediction method- Protein Homology (201 aa)
 
          0.560
CN09_25935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1008 aa)
 
 
  0.516
CN09_16300
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the monovalent cation-proton antiporter 2 (CPA2) transporter (TC 2.A.37) family (606 aa)
         
  0.510
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
     
 
  0.493
CN09_21195
Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (732 aa)
   
 
  0.466
CN09_07195
Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (619 aa)
   
 
  0.466
CN09_19725
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (1199 aa)
 
 
 
  0.453
CN09_32780
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (65 aa)
              0.447
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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