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CN09_32790 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_32790" - Short-chain dehydrogenase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
CN09_32790Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (698 aa)    
Predicted Functional Partners:
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
   
 
  0.999
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family (475 aa)
         
  0.992
CN09_32785
Sugar isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (430 aa)
 
          0.986
rhaM
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose (108 aa)
 
   
  0.954
CN09_32800
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (331 aa)
 
 
 
  0.951
CN09_32795
DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
 
     
  0.946
CN09_32825
Carbohydrate kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (463 aa)
 
     
  0.906
CN09_17565
Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (243 aa)
   
   
  0.900
CN09_32815
Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (337 aa)
 
          0.887
CN09_01270
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (109 aa)
 
   
  0.863
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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