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CN09_32855 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_32855" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_32855Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (391 aa)    
Predicted Functional Partners:
CN09_32850
Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (274 aa)
 
   
  0.999
CN09_29185
Mandelate racemase; Derived by automated computational analysis using gene prediction method- Protein Homology (471 aa)
 
   
  0.999
CN09_32860
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (385 aa)
 
        0.975
CN09_29190
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (381 aa)
 
        0.861
CN09_29195
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (231 aa)
 
          0.812
CN09_00120
Acetate CoA-transferase YdiF; CoA transferase having broad substrate specificity for short-chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons (518 aa)
   
        0.767
CN09_32865
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (235 aa)
 
          0.761
CN09_25000
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (386 aa)
   
      0.742
CN09_23555
Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (972 aa)
   
   
  0.658
CN09_26870
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
   
   
  0.573
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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