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CN09_32860 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_32860" - Oxidoreductase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
CN09_32860Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (385 aa)    
Predicted Functional Partners:
CN09_32850
Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (274 aa)
 
   
  0.977
CN09_32855
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (391 aa)
 
        0.975
CN09_29185
Mandelate racemase; Derived by automated computational analysis using gene prediction method- Protein Homology (471 aa)
 
        0.821
CN09_32865
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (235 aa)
 
     
  0.721
CN09_29170
2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (340 aa)
 
     
  0.600
CN09_29200
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (427 aa)
 
     
  0.565
CN09_29155
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (431 aa)
 
     
  0.529
CN09_22605
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (425 aa)
 
     
  0.522
CN09_29180
4,5-dihydroxyphthalate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (421 aa)
 
          0.515
CN09_29195
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (231 aa)
 
     
  0.506
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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