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CN09_32875 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_32875" - Epimerase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_32875Epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)    
Predicted Functional Partners:
CN09_27845
Acyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)
 
     
  0.589
CN09_32480
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (218 aa)
   
          0.534
CN09_29850
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (92 aa)
   
          0.486
CN09_25875
Beta-galactosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (713 aa)
 
     
  0.480
CN09_27205
Adenylylsulfate kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (169 aa)
   
          0.468
CN09_20915
Sugar kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (352 aa)
 
     
  0.465
CN09_20925
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (385 aa)
 
   
  0.463
CN09_30580
SAM-dependent methlyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (391 aa)
 
 
  0.448
CN09_20765
Acetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (157 aa)
 
 
 
  0.445
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family (475 aa)
   
   
  0.433
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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