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CN09_32955 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_32955" - UPF0271 protein CN09_32955 in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_32955UPF0271 protein CN09_32955; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0271 (lamB) family (254 aa)    
Predicted Functional Partners:
CN09_32965
Acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (533 aa)
   
  0.995
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
   
   
  0.989
CN09_32950
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (422 aa)
 
   
  0.961
CN09_31025
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (332 aa)
   
  0.939
CN09_21685
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
   
  0.938
CN09_21680
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (323 aa)
   
  0.937
CN09_30950
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (323 aa)
   
  0.930
CN09_32960
Putative hydro-lyase CN09_32960; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the D-glutamate cyclase family (268 aa)
 
        0.927
CN09_31030
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (236 aa)
   
  0.910
CN09_32970
Acetyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (583 aa)
   
        0.821
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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