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CN09_33275 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_33275" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_33275Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (324 aa)    
Predicted Functional Partners:
CN09_01290
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (377 aa)
 
     
  0.787
pheT
Phenylalanine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily (807 aa)
         
  0.775
CN09_33270
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (66 aa)
              0.597
CN09_23850
Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (380 aa)
              0.558
CN09_33285
Phosphodiesterase; Derived by automated computational analysis using gene prediction method- Protein Homology (266 aa)
 
     
  0.525
guaB
Inosine-5’-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5’-phosphate (IMP) to xanthosine 5’-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth; Belongs to the IMPDH/GMPR family (494 aa)
         
  0.518
CN09_22790
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (256 aa)
   
          0.505
CN09_34380
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (667 aa)
 
 
 
  0.487
CN09_24340
Epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
 
     
  0.482
CN09_33310
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (521 aa)
 
          0.482
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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