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CN09_33500 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_33500" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_33500Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (250 aa)    
Predicted Functional Partners:
CN09_33495
Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (503 aa)
 
   
  0.978
dnaE2
Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase (1084 aa)
 
   
  0.961
CN09_33510
Putative SOS response-associated peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SOS response-associated peptidase family (257 aa)
 
        0.913
CN09_18280
DNA polymerase-like protein; Derived by automated computational analysis using gene prediction method- Protein Homology (210 aa)
 
   
  0.716
CN09_17905
DNA repair protein; Derived by automated computational analysis using gene prediction method- Protein Homology (475 aa)
 
   
  0.543
CN09_33505
ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (350 aa)
 
          0.536
CN09_17910
Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase (1133 aa)
 
   
  0.457
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair (240 aa)
   
   
  0.446
CN09_05800
Chloride channel protein; Derived by automated computational analysis using gene prediction method- Protein Homology (598 aa)
   
          0.443
CN09_33485
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine (150 aa)
              0.440
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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