STRINGSTRING
CN09_33580 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_33580" - DEAD/DEAH box helicase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_33580DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method- Protein Homology (1169 aa)    
Predicted Functional Partners:
CN09_18560
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1702 aa)
   
   
  0.999
CN09_33585
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (260 aa)
 
          0.989
CN09_16595
Transcription accessory protein; Derived by automated computational analysis using gene prediction method- Protein Homology (769 aa)
     
   
  0.786
CN09_17035
Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family (376 aa)
              0.586
CN09_17415
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method- Protein Homology (822 aa)
   
 
  0.579
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (699 aa)
     
 
  0.568
CN09_11435
DNA helicase; Derived by automated computational analysis using gene prediction method- Protein Homology (589 aa)
   
   
  0.564
CN09_33575
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (440 aa)
              0.557
CN09_00705
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (988 aa)
   
   
  0.484
CN09_22470
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (2631 aa)
       
 
  0.475
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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