STRINGSTRING
CN09_33625 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_33625" - Replication initiation protein RepC in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_33625Replication initiation protein RepC; Derived by automated computational analysis using gene prediction method- Protein Homology (405 aa)    
Predicted Functional Partners:
CN09_33630
Replication protein RepB; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ParB family (319 aa)
 
     
  0.889
CN09_33640
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method- Protein Homology (398 aa)
 
     
  0.869
repA
Putative replication protein A; This protein is coded by a hairy root Ri plasmid. It is possibly involved in regulating the plasmid copy-number (404 aa)
 
     
  0.806
repB
Putative replication protein B; This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication (340 aa)
 
     
  0.748
CN09_22415
Plasmid partitioning protein ParA; Derived by automated computational analysis using gene prediction method- Protein Homology (391 aa)
 
     
  0.682
CN09_19450
Integrase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ’phage’ integrase family (362 aa)
 
   
  0.674
CN09_00535
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (83 aa)
 
          0.662
CN09_33780
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (98 aa)
 
          0.649
CN09_33620
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1432 aa)
         
  0.630
CN09_18575
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (342 aa)
   
          0.607
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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