STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_33640Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology (398 aa)    
Predicted Functional Partners:
CN09_18560
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.999
CN09_33630
Replication protein RepB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family
 
 
 0.922
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.906
CN09_33625
Replication initiation protein RepC; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.869
repB
Putative replication protein B; This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication
 
 
 0.807
repC
Putative replication protein C; This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication
 
   
 0.806
CN09_22425
Replication initiation protein RepC; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.805
CN09_15420
Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.747
CN09_22420
RepB2 replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family
 
 
 0.616
CN09_19450
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family
 
  
 0.608
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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