STRINGSTRING
CN09_33670 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_33670" - Conjugal transfer protein TrbJ in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_33670Conjugal transfer protein TrbJ; Derived by automated computational analysis using gene prediction method- Protein Homology (267 aa)    
Predicted Functional Partners:
CN09_33680
Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method- Protein Homology (393 aa)
 
   
  0.996
CN09_33650
Conjugal transfer protein TrbB; Derived by automated computational analysis using gene prediction method- Protein Homology (325 aa)
 
   
  0.995
CN09_33665
Conjugal transfer protein TrbE; Derived by automated computational analysis using gene prediction method- Protein Homology (818 aa)
 
   
  0.994
CN09_33685
Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method- Protein Homology (220 aa)
 
   
  0.992
CN09_33700
Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method- Protein Homology (432 aa)
 
   
  0.989
CN09_33660
Conjugal transfer protein TrbD; Derived by automated computational analysis using gene prediction method- Protein Homology (99 aa)
 
     
  0.982
CN09_19510
Conjugal transfer protein TrbD; Derived by automated computational analysis using gene prediction method- Protein Homology (99 aa)
 
   
  0.979
CN09_33655
Conjugal transfer protein TrbC; Derived by automated computational analysis using gene prediction method- Protein Homology (127 aa)
 
     
  0.976
CN09_19540
Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
 
   
  0.963
CN09_33645
Acyl-homoserine-lactone synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (207 aa)
 
          0.958
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (16%) [HD]