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CN09_33735 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_33735" - Conjugal transfer protein TraF in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_33735Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method- Protein Homology (187 aa)    
Predicted Functional Partners:
CN09_33730
Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method- Protein Homology (387 aa)
 
     
  0.969
CN09_33740
Conjugal transfer system TraA; oriT nicking enzyme; Derived by automated computational analysis using gene prediction method- Protein Homology (1108 aa)
 
     
  0.968
CN09_33725
Conjugal transfer protein TraH; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)
 
     
  0.958
CN09_33755
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method- Protein Homology (644 aa)
 
     
  0.901
CN09_18560
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1702 aa)
 
          0.900
CN09_33750
Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method- Protein Homology (71 aa)
 
     
  0.877
CN09_33745
Conjugal transfer protein TraC; Derived by automated computational analysis using gene prediction method- Protein Homology (98 aa)
 
     
  0.876
CN09_33690
Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
 
          0.844
CN09_33685
Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method- Protein Homology (220 aa)
 
          0.844
CN09_19540
Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
 
          0.844
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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