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CN09_33920 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_33920" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_33920Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)    
Predicted Functional Partners:
CN09_33900
Sarcosine oxidase subunit gamma; Derived by automated computational analysis using gene prediction method- Protein Homology (184 aa)
 
          0.886
CN09_33905
Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family (977 aa)
 
     
  0.834
CN09_33910
Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology (92 aa)
 
          0.829
CN09_33915
Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology (416 aa)
 
          0.795
CN09_33925
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)
 
     
  0.767
CN09_33930
Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
 
     
  0.643
CN09_33940
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glutamate synthase family (442 aa)
 
     
  0.604
CN09_33935
Protein GlxC; Derived by automated computational analysis using gene prediction method- Protein Homology (228 aa)
 
          0.582
CN09_03015
Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family (985 aa)
 
     
  0.531
CN09_13260
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (292 aa)
 
 
 
  0.508
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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