STRINGSTRING
CN09_33960 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_33960" - Porin in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_33960Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (165 aa)    
Predicted Functional Partners:
CN09_08645
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (339 aa)
 
 
 
  0.772
CN09_04795
Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (228 aa)
 
 
      0.762
CN09_12660
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (497 aa)
 
          0.742
CN09_05180
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (465 aa)
 
          0.735
CN09_08650
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
   
          0.724
CN09_03935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (348 aa)
   
          0.719
CN09_05825
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (199 aa)
 
          0.711
CN09_29690
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (247 aa)
 
     
  0.710
CN09_33965
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (199 aa)
 
          0.710
CN09_33860
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (199 aa)
 
          0.710
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (12%) [HD]