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CN09_34075 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_34075" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_34075Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (179 aa)    
Predicted Functional Partners:
CN09_16300
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the monovalent cation-proton antiporter 2 (CPA2) transporter (TC 2.A.37) family (606 aa)
              0.984
CN09_17775
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (234 aa)
   
          0.764
CN09_05285
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (169 aa)
   
          0.762
CN09_01630
30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bS21 family (70 aa)
   
          0.759
CN09_21495
30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bS21 family (81 aa)
   
          0.747
CN09_01990
UPF0335 protein CN09_01990; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0335 family (84 aa)
   
          0.744
CN09_10645
DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology (149 aa)
   
          0.718
CN09_17570
Recombinase RecB; Derived by automated computational analysis using gene prediction method- Protein Homology (1063 aa)
   
          0.713
CN09_14125
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (230 aa)
   
          0.711
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination (259 aa)
   
          0.710
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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