STRINGSTRING
CN09_34115 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_34115" - Drug:proton antiporter in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Textmining
[Homology]
Score
CN09_34115Drug-proton antiporter; Derived by automated computational analysis using gene prediction method- Protein Homology (122 aa)    
Predicted Functional Partners:
CN09_34125
DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (228 aa)
          0.816
CN09_21140
DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (233 aa)
          0.795
CN09_18755
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (234 aa)
          0.782
CN09_33130
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (234 aa)
          0.779
CN09_12095
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (233 aa)
          0.733
CN09_04490
UPF0310 protein CN09_04490; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0310 family (190 aa)
 
          0.715
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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