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CN09_34275 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_34275" - Membrane protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_34275Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (240 aa)    
Predicted Functional Partners:
CN09_34280
Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method- Protein Homology (79 aa)
              0.579
CN09_16035
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (539 aa)
              0.550
CN09_34020
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (80 aa)
   
          0.497
CN09_08380
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (83 aa)
   
          0.461
CN09_16955
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0337 (CsbD) family (63 aa)
 
          0.448
CN09_16300
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the monovalent cation-proton antiporter 2 (CPA2) transporter (TC 2.A.37) family (606 aa)
              0.420
CN09_16815
Pyrophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (102 aa)
   
          0.409
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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