STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_34345Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology (294 aa)    
Predicted Functional Partners:
CN09_01960
Cu resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.974
CN09_28670
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.712
CN09_06305
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
       0.688
CN09_10470
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.665
CN09_12525
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     0.662
CN09_01535
Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.637
CN09_21850
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.621
CN09_34340
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+
       0.613
CN09_28665
Fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.588
CN09_16170
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.513
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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