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CN09_34370 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_34370" - ABC transporter permease in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
CN09_34370ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (278 aa)    
Predicted Functional Partners:
CN09_34365
Lactose ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (286 aa)
 
  0.991
CN09_34375
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (362 aa)
 
  0.941
CN09_34380
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (667 aa)
 
          0.936
CN09_34360
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (424 aa)
 
 
 
  0.901
CN09_19870
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (307 aa)
 
  0.813
CN09_21440
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
 
  0.805
CN09_25080
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
  0.802
CN09_18345
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
 
  0.796
CN09_03330
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (300 aa)
 
  0.790
CN09_26135
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
 
  0.790
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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