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CN09_34425 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_34425" - Sugar ABC transporter in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_34425Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (318 aa)    
Predicted Functional Partners:
CN09_34420
Ribonucleotide-diphosphate reductase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
   
  0.933
CN09_34415
Ribose ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (324 aa)
 
       
0.839
CN09_34410
Myo-inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
              0.814
CN09_34405
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
         
  0.781
CN09_30845
D-ribose transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method- Protein Homology (492 aa)
   
  0.754
CN09_22120
D-ribose transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method- Protein Homology (506 aa)
   
  0.725
CN09_23775
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (516 aa)
   
  0.709
CN09_34430
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)
 
     
  0.707
CN09_24325
Lipase; Derived by automated computational analysis using gene prediction method- Protein Homology (497 aa)
   
  0.704
CN09_20965
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (492 aa)
   
  0.697
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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