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CN09_34435 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_34435" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_34435Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (352 aa)    
Predicted Functional Partners:
CN09_34430
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)
 
          0.807
CN09_34410
Myo-inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
 
     
  0.713
CN09_01360
AP endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (307 aa)
 
          0.520
CN09_34405
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
 
          0.505
CN09_01365
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (387 aa)
 
     
  0.465
CN09_34420
Ribonucleotide-diphosphate reductase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
     
 
  0.459
CN09_20990
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (390 aa)
 
     
  0.447
CN09_11580
5-dehydro-2-deoxygluconokinase; Derived by automated computational analysis using gene prediction method- Protein Homology (644 aa)
 
     
  0.441
CN09_01355
Protein iolH; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
 
          0.439
CN09_34425
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (318 aa)
         
  0.434
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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