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CN09_34445 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_34445" - AP endonuclease in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_34445AP endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (353 aa)    
Predicted Functional Partners:
CN09_34440
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (387 aa)
   
  0.984
CN09_01455
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
   
  0.874
CN09_34460
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the TPP enzyme family (623 aa)
         
  0.866
CN09_34455
MocC; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
 
       
0.862
CN09_34450
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (271 aa)
            0.862
CN09_01365
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (387 aa)
   
  0.808
CN09_20990
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (390 aa)
   
  0.779
CN09_34485
1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (374 aa)
   
  0.778
CN09_34465
Myo-inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
   
   
  0.683
CN09_34470
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the aldehyde dehydrogenase family (476 aa)
         
  0.622
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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