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CN09_34485 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_34485" - 1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_344851-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (374 aa)    
Predicted Functional Partners:
CN09_34455
MocC; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
   
  0.939
CN09_34460
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the TPP enzyme family (623 aa)
 
     
  0.914
CN09_34465
Myo-inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
 
     
0.913
CN09_34475
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the HpcH/HpaI aldolase family (268 aa)
 
          0.910
CN09_34480
3-phosphoglycerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family (322 aa)
         
  0.875
CN09_34490
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
 
   
  0.873
CN09_34470
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the aldehyde dehydrogenase family (476 aa)
   
   
  0.850
CN09_11590
MocC; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
   
  0.846
CN09_11580
5-dehydro-2-deoxygluconokinase; Derived by automated computational analysis using gene prediction method- Protein Homology (644 aa)
     
  0.838
CN09_11595
5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)
 
     
  0.830
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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