STRINGSTRING
CN09_34545 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_34545" - Transposase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_34545Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (117 aa)    
Predicted Functional Partners:
CN09_34550
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (128 aa)
          0.996
CN09_34540
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (514 aa)
     
  0.960
CN09_19310
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (540 aa)
     
  0.862
CN09_19300
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (120 aa)
 
          0.727
CN09_19270
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)
 
     
  0.681
CN09_12885
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)
 
          0.669
CN09_25960
DNA polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology (419 aa)
 
          0.667
CN09_22625
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (226 aa)
 
          0.660
CN09_32200
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (213 aa)
 
          0.609
CN09_33000
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (371 aa)
 
          0.561
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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