STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAB1_1180RNA-binding region RNP-1 (RNA recognition motif):Di-trans-poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (254 aa)    
Predicted Functional Partners:
cdsA
Phosphatidate cytidylyltransferase:Homoserine kinase.
 
  
 0.974
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
  
  
 0.947
BAB1_1178
Zinc metalloprotease; Mammalian sterol-regulatory element binding protein (SREBP) site 2 protease:PDZ/DHR/GLGF domain:Zinc metalloprotease (putativ.
 
  
 0.898
pyrH
Aspartate/glutamate/uridylate kinase:Glutamate 5-kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
  
 0.893
BAB1_0429
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
 
 0.864
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
     
 0.854
BAB1_1787
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
 
 0.852
proS
Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro); Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 2 subfamily.
  
    0.813
nusA
Ribosomal protein S1:RNA binding S1:KH domain:KH domain, type 1; Participates in both transcription termination and antitermination.
  
    0.805
rimP
Domain of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
  
    0.803
Your Current Organism:
Brucella abortus
NCBI taxonomy Id: 359391
Other names: B. abortus 2308, Brucella abortus 2308, Brucella melitensis biovar Abortus 2308
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