node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABM45471.1 | gidA | BARBAKC583_0395 | BARBAKC583_0011 | Identified by match to protein family HMM PF00226; match to protein family HMM PF01556. | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.543 |
ABM45471.1 | polA | BARBAKC583_0395 | BARBAKC583_0002 | Identified by match to protein family HMM PF00226; match to protein family HMM PF01556. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.564 |
ABM45471.1 | trmE | BARBAKC583_0395 | BARBAKC583_0010 | Identified by match to protein family HMM PF00226; match to protein family HMM PF01556. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.747 |
gidA | ABM45471.1 | BARBAKC583_0011 | BARBAKC583_0395 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | Identified by match to protein family HMM PF00226; match to protein family HMM PF01556. | 0.543 |
gidA | gidB | BARBAKC583_0011 | BARBAKC583_0012 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.983 |
gidA | mutL | BARBAKC583_0011 | BARBAKC583_1201 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.504 |
gidA | parA | BARBAKC583_0011 | BARBAKC583_0013 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | Chromosome partitioning protein ParA; Identified by similarity to SP:O05189; match to protein family HMM PF01656. | 0.791 |
gidA | parB | BARBAKC583_0011 | BARBAKC583_0014 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | Chromosome partitioning protein ParB; Identified by similarity to SP:O05190; match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | 0.685 |
gidA | polA | BARBAKC583_0011 | BARBAKC583_0002 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.539 |
gidA | rho | BARBAKC583_0011 | BARBAKC583_0009 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.501 |
gidA | rnpA | BARBAKC583_0011 | BARBAKC583_1047 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.720 |
gidA | trmE | BARBAKC583_0011 | BARBAKC583_0010 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.995 |
gidA | yidC | BARBAKC583_0011 | BARBAKC583_1048 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | Inner membrane protein, 60Kd; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.571 |
gidB | gidA | BARBAKC583_0012 | BARBAKC583_0011 | Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.983 |
gidB | parA | BARBAKC583_0012 | BARBAKC583_0013 | Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | Chromosome partitioning protein ParA; Identified by similarity to SP:O05189; match to protein family HMM PF01656. | 0.832 |
gidB | parB | BARBAKC583_0012 | BARBAKC583_0014 | Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | Chromosome partitioning protein ParB; Identified by similarity to SP:O05190; match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | 0.906 |
gidB | polA | BARBAKC583_0012 | BARBAKC583_0002 | Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.544 |
gidB | rho | BARBAKC583_0012 | BARBAKC583_0009 | Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.499 |
gidB | rnpA | BARBAKC583_0012 | BARBAKC583_1047 | Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.474 |
gidB | trmE | BARBAKC583_0012 | BARBAKC583_0010 | Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.955 |