STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alrAlanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (337 aa)    
Predicted Functional Partners:
ddlA
D-alanine--D-alanine ligase; Cell wall formation.
 
 
 0.972
EAT97807.1
D-amino acid aminotransferase; Pfam match to PF01063.14 Aminotran_4.
    
 0.922
pgp2
Peptidoglycan LD-carboxypeptidase; Pfam match to PF03734.9 YkuD.
  
    0.802
EAT98011.1
Hypothetical protein.
       0.800
ABW74763.1
Hypothetical protein.
       0.781
ABW00000.1
Hypothetical protein.
       0.762
nadD/rsfS
Fused nicotinate-mononucleotide adenylyltransferase / ribosomal silencing factor; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). Belongs to the Iojap/RsfS family.
  
  
 0.684
EAT98524.1
FAD-dependent oxidoreductase; Pfam match to PF01266.19 DAO.
  
  
 0.670
murD
Pfam match to PF08245.7 Mur_ligase_M; Belongs to the MurCDEF family.
 
 
 
 0.667
mnmC
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the N-terminal section; belongs to the methyltransferase superfamily. tRNA (mnm(5)s(2)U34)-methyltransferase family.
  
  
 0.665
Your Current Organism:
Campylobacter concisus
NCBI taxonomy Id: 360104
Other names: C. concisus 13826, Campylobacter concisus 13826, Campylobacter concisus str. 13826, Campylobacter concisus strain 13826
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.