STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tssJType VI secretion system, membrane platform protein; Pfam match to PF12790.2 T6SS-SciN. (155 aa)    
Predicted Functional Partners:
tssL
Type VI secretion system, membrane platform protein; Pfam match to PF09850.4 DUF2077.
  
  
 0.979
tssK
Type VI secretion system, membrane platform protein; Pfam match to PF05936.7 DUF876.
  
  
 0.961
tssB
Type VI secretion system, tubular sheath protein; Pfam match to PF05591.7 DUF770.
  
  
 0.959
tssA
Type VI secretion system protein.
  
  
 0.949
tssC
Type VI secretion system, tubular sheath protein; Pfam match to PF05943.7 DUF877.
  
  
 0.940
tssF
Type VI secretion system protein; Pfam match to PF05947.7 DUF879.
  
  
 0.933
tssE
Type VI secretion system, baseplate protein.
  
  
 0.926
tssM
Type VI secretion system, membrane platform protein; Pfam matches to PF14331.1 ImcF-related_N, and to PF06744.7 DUF1215, and to PF06761.7 IcmF-related.
  
  
 0.917
tssG
Type VI secretion system protein; Pfam match to PF06996.6 DUF1305.
  
  
 0.916
tagH
Type VI secretion system protein.
  
  
 0.868
Your Current Organism:
Campylobacter concisus
NCBI taxonomy Id: 360104
Other names: C. concisus 13826, Campylobacter concisus 13826, Campylobacter concisus str. 13826, Campylobacter concisus strain 13826
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.