Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EAT99049.1 | EAT99104.1 | CCC13826_1855 | CCC13826_1856 | Putative protein (MOSC domain); Pfam match to PF03473.12 MOSC. | Cache sensor-containing MCP-domain signal transduction protein; Pfam matches to PF00015.16 MCPsignal, and to PF02743.13 Cache_1, and to PF00015.16 MCPsignal. | 0.581 |
| EAT99049.1 | ruvC | CCC13826_1855 | CCC13826_1854 | Putative protein (MOSC domain); Pfam match to PF03473.12 MOSC. | RuvABC resolvasome, subunit RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.737 |
| EAT99075.1 | ruvC | CCC13826_1784 | CCC13826_1854 | Mg chelatase-related protein; Pfam matches to PF01078.16 Mg_chelatase, and to PF13541.1 ChlI, and to PF13335.1 Mg_chelatase_2, and to PF07728.9 AAA_5, and to PF00493.18 MCM, and to PF00158.21 Sigma54_activat. | RuvABC resolvasome, subunit RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.653 |
| EAT99104.1 | EAT99049.1 | CCC13826_1856 | CCC13826_1855 | Cache sensor-containing MCP-domain signal transduction protein; Pfam matches to PF00015.16 MCPsignal, and to PF02743.13 Cache_1, and to PF00015.16 MCPsignal. | Putative protein (MOSC domain); Pfam match to PF03473.12 MOSC. | 0.581 |
| EAT99104.1 | ruvC | CCC13826_1856 | CCC13826_1854 | Cache sensor-containing MCP-domain signal transduction protein; Pfam matches to PF00015.16 MCPsignal, and to PF02743.13 Cache_1, and to PF00015.16 MCPsignal. | RuvABC resolvasome, subunit RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.556 |
| addA | dnaE | CCC13826_0736 | CCC13826_0485 | Exonuclease V, helicase AddA; Pfam matches to PF00580.16 UvrD-helicase, and to PF13361.1 UvrD_C, and to PF13361.1 UvrD_C, and to PF13538.1 UvrD_C_2. | DNA polymerase III, alpha subunit; Pfam matches to PF07733.7 DNA_pol3_alpha, and to PF02811.14 PHP, and to PF14579.1 HHH_6. | 0.579 |
| addA | polA | CCC13826_0736 | CCC13826_0350 | Exonuclease V, helicase AddA; Pfam matches to PF00580.16 UvrD-helicase, and to PF13361.1 UvrD_C, and to PF13361.1 UvrD_C, and to PF13538.1 UvrD_C_2. | DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.644 |
| addA | recJ | CCC13826_0736 | CCC13826_0910 | Exonuclease V, helicase AddA; Pfam matches to PF00580.16 UvrD-helicase, and to PF13361.1 UvrD_C, and to PF13361.1 UvrD_C, and to PF13538.1 UvrD_C_2. | Single-stranded DNA-specific exonuclease; Pfam matches to PF01368.15 DHH, and to PF02272.14 DHHA1. | 0.445 |
| addA | ruvC | CCC13826_0736 | CCC13826_1854 | Exonuclease V, helicase AddA; Pfam matches to PF00580.16 UvrD-helicase, and to PF13361.1 UvrD_C, and to PF13361.1 UvrD_C, and to PF13538.1 UvrD_C_2. | RuvABC resolvasome, subunit RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.541 |
| dnaE | addA | CCC13826_0485 | CCC13826_0736 | DNA polymerase III, alpha subunit; Pfam matches to PF07733.7 DNA_pol3_alpha, and to PF02811.14 PHP, and to PF14579.1 HHH_6. | Exonuclease V, helicase AddA; Pfam matches to PF00580.16 UvrD-helicase, and to PF13361.1 UvrD_C, and to PF13361.1 UvrD_C, and to PF13538.1 UvrD_C_2. | 0.579 |
| dnaE | dnaN | CCC13826_0485 | CCC13826_1851 | DNA polymerase III, alpha subunit; Pfam matches to PF07733.7 DNA_pol3_alpha, and to PF02811.14 PHP, and to PF14579.1 HHH_6. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.994 |
| dnaE | polA | CCC13826_0485 | CCC13826_0350 | DNA polymerase III, alpha subunit; Pfam matches to PF07733.7 DNA_pol3_alpha, and to PF02811.14 PHP, and to PF14579.1 HHH_6. | DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.610 |
| dnaE | ruvB | CCC13826_0485 | CCC13826_0384 | DNA polymerase III, alpha subunit; Pfam matches to PF07733.7 DNA_pol3_alpha, and to PF02811.14 PHP, and to PF14579.1 HHH_6. | RuvABC resolvasome, subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.408 |
| dnaE | ruvC | CCC13826_0485 | CCC13826_1854 | DNA polymerase III, alpha subunit; Pfam matches to PF07733.7 DNA_pol3_alpha, and to PF02811.14 PHP, and to PF14579.1 HHH_6. | RuvABC resolvasome, subunit RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.468 |
| dnaN | dnaE | CCC13826_1851 | CCC13826_0485 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase III, alpha subunit; Pfam matches to PF07733.7 DNA_pol3_alpha, and to PF02811.14 PHP, and to PF14579.1 HHH_6. | 0.994 |
| dnaN | polA | CCC13826_1851 | CCC13826_0350 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.997 |
| dnaN | recJ | CCC13826_1851 | CCC13826_0910 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Single-stranded DNA-specific exonuclease; Pfam matches to PF01368.15 DHH, and to PF02272.14 DHHA1. | 0.505 |
| dnaN | ruvA | CCC13826_1851 | CCC13826_0113 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | RuvABC resolvasome, subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.424 |
| dnaN | ruvC | CCC13826_1851 | CCC13826_1854 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | RuvABC resolvasome, subunit RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.513 |
| polA | addA | CCC13826_0350 | CCC13826_0736 | DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Exonuclease V, helicase AddA; Pfam matches to PF00580.16 UvrD-helicase, and to PF13361.1 UvrD_C, and to PF13361.1 UvrD_C, and to PF13538.1 UvrD_C_2. | 0.644 |
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