STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0797Putative ABC transporter, ATP-binding protein. (228 aa)    
Predicted Functional Partners:
BAV0796
Putative ABC transporter, transmembrane protein.
 
 
 0.964
BAV0795
Conserved hypothetical protein; Start codon not provided.
 
    0.919
BAV0798
Putative exported protein; Start codon not provided.
 
  
 0.914
srfC
Putative virulence factor.
 
    0.862
srfB
Putative virulence factor.
 
     0.848
BAV0799
Putative membrane protein.
       0.790
BAV0794
Putative lipoprotein.
       0.769
BAV0793
Putative lipoprotein.
       0.768
BAV0792
Putative membrane protein; Start codon not provided.
 
     0.749
lolE
Lipoprotein releasing system, transmembrane protein; Start codon not provided.
  
 
 0.737
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.