STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0797Putative ABC transporter, ATP-binding protein. (228 aa)    
Predicted Functional Partners:
BAV0796
Putative ABC transporter, transmembrane protein.
 
 
 0.969
BAV0795
Conserved hypothetical protein; Start codon not provided.
 
  
 0.911
BAV0798
Putative exported protein; Start codon not provided.
 
  
 0.900
srfC
Putative virulence factor.
 
    0.851
srfB
Putative virulence factor.
 
     0.836
BAV0799
Putative membrane protein.
       0.774
macB
Putative macrolide-specific ABC-type efflux carrier; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
0.774
lolE
Lipoprotein releasing system, transmembrane protein; Start codon not provided.
  
 
 0.770
BAV0794
Putative lipoprotein.
       0.751
BAV0793
Putative lipoprotein.
       0.750
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.