STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0978Putative substrate-CoA ligase. (506 aa)    
Predicted Functional Partners:
BAV0976
Probable hydrolase.
 
 
 
 0.837
BAV0974
enoyl-CoA hydratase/isomerase family protein.
 
 
 0.828
dltA
Putative D-alanine-D-alanyl carrier protein ligase.
 
     0.787
BAV0979
ABC transporter atp-binding protein.
       0.778
BAV0980
High-affinity branched-chain amino acid transport ATP-binding protein BraF.
       0.778
BAV0981
ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
    0.775
BAV0977
Hypothetical protein; No significant database matches.
       0.773
BAV0982
ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.773
BAV0975
GntR-family transcriptional regulator.
       0.762
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.652
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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