STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1360Putative exported protein. (129 aa)    
Predicted Functional Partners:
BAV1541
Putative competence protein.
  
  
 0.710
cysM
Cysteine synthase B; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
    0.679
BAV1357
Putative membrane protein; Start codon not provided.
       0.637
hldE
Putative D-beta-d-heptose 7-phosphate kinase; Similar to N-terminal half of Escherichia coli bifunctional protein HldE [includes: D-beta-d-heptose 7-phosphate kinase (EC 2.7.1.-); d-beta-d- heptose 1-phosphate adenosyltransferase (EC 2.7.7.-)] HldE SWALL:HLDE_ECOLI (SWALL:P76658) (477 aa) fasta scores: E(): 5.6e-48, 54.09 38d in 305 aa.
       0.637
hldD
ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
       0.628
BAV0331
Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.
   
  
 0.586
BAV3046
Type 4 prepilin-like protein leader peptide processing enzyme; Belongs to the peptidase A24 family.
   
  
 0.586
ssb
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.563
BAV1356
Putative membrane protein.
       0.527
ihfB
Integration host factor beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
  
  
 0.508
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.