STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1405Putative membrane-bound metal-dependent hydrolase. (343 aa)    
Predicted Functional Partners:
pepE
Peptidase E; Belongs to the peptidase S51 family.
       0.762
BAV2255
Putative 3-deoxy-D-manno-octulosonic acid kinase; Start codon not provided.
  
   
 0.602
BAV1404
Putative membrane protein.
       0.548
BAV1403
Putative membrane protein; No significant database matches.
       0.541
BAV2939
Conserved hypothetical protein.
  
     0.535
BAV1284
Putative phage methyltransferase.
  
    0.533
BAV1619
Putative lipoprotein.
  
     0.510
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
  
    0.479
BAV1283
Putative phage methyltransferase.
   
    0.439
BAV2464
Putative lipoprotein.
  
     0.426
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.