STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1590Putative DNA photolyase; Start codon not provided. (538 aa)    
Predicted Functional Partners:
BAV1591
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
   
 0.924
BAV1589
Conserved hypothetical protein.
 
     0.848
cho
Excinuclease; Start codon not provided.
     
 0.803
BAV2081
Conserved hypothetical protein.
 
   
 0.584
BAV2082
Putative dehydrogenase.
 
   
 0.555
BAV2077
Putative lipoprotein.
 
     0.552
BAV2076
Putative short-chain dehydrogenase; Start codon not provided.
 
   
 0.501
phrB
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
   
 0.498
BAV2078
Putative transporter.
 
     0.458
BAV2075
Putative isomerase; Weakly similar to steroid delta-isomerases from Nocardioides simplex and Pseudomonas putida.
 
   
 0.438
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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