STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1804Putative lipoprotein; No significant database matches. (659 aa)    
Predicted Functional Partners:
BAV3379
Putative membrane protein.
  
     0.766
BAV0388
Hypothetical protein.
  
     0.749
gspJ
General secretion pathway protein J.
  
     0.731
gspH
General secretion pathway protein H.
  
     0.722
BAV2855
Putative glycoside hydrolase; Start codon not provided; Belongs to the glycosyl hydrolase 31 family.
  
 
  0.721
gspN
General secretion pathway protein N.
  
     0.713
dltD
Putative D-alanine transferase.
  
     0.700
BAV0691
Putative membrane protein.
  
     0.699
plcN2
Non-hemolytic phospholipase C; Start codon not provided; Also similar to BAV1084 (49.7 38d.).
 
     0.692
BAV2674
Putative membrane protein.
 
     0.690
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.