BAV2504 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAV2504

Putative membrane protein. (256 aa)

Predicted Functional Partners:

eamA

0.787

BAV0476

0.576

fliT

0.524

BAV2506

0.519

flaG

0.513

BAV0886

0.512

BAV2827

0.508

BAV2282

0.486

BAV2608

0.483

rseA

0.479

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV0476	BAV0886	BAV0476	BAV0886	Putative exported protein.	Putative membrane protein.	0.518
BAV0476	BAV2282	BAV0476	BAV2282	Putative exported protein.	Putative membrane protein.	0.640
BAV0476	BAV2504	BAV0476	BAV2504	Putative exported protein.	Putative membrane protein.	0.576
BAV0476	BAV2608	BAV0476	BAV2608	Putative exported protein.	Putative phospholipase; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.	0.725
BAV0476	BAV2827	BAV0476	BAV2827	Putative exported protein.	Multidrug resistance protein; Start codon not provided.	0.479
BAV0476	flaG	BAV0476	BAV1724	Putative exported protein.	Putative flagellar protein.	0.535
BAV0476	fliT	BAV0476	BAV1721	Putative exported protein.	Flagellar protein.	0.424
BAV0476	rseA	BAV0476	BAV1126	Putative exported protein.	sigma-E factor negative regulatory protein.	0.659
BAV0886	BAV0476	BAV0886	BAV0476	Putative membrane protein.	Putative exported protein.	0.518
BAV0886	BAV2282	BAV0886	BAV2282	Putative membrane protein.	Putative membrane protein.	0.432
BAV0886	BAV2504	BAV0886	BAV2504	Putative membrane protein.	Putative membrane protein.	0.512
BAV0886	BAV2827	BAV0886	BAV2827	Putative membrane protein.	Multidrug resistance protein; Start codon not provided.	0.654
BAV0886	flaG	BAV0886	BAV1724	Putative membrane protein.	Putative flagellar protein.	0.516
BAV2282	BAV0476	BAV2282	BAV0476	Putative membrane protein.	Putative exported protein.	0.640
BAV2282	BAV0886	BAV2282	BAV0886	Putative membrane protein.	Putative membrane protein.	0.432
BAV2282	BAV2504	BAV2282	BAV2504	Putative membrane protein.	Putative membrane protein.	0.486
BAV2282	BAV2608	BAV2282	BAV2608	Putative membrane protein.	Putative phospholipase; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.	0.471
BAV2282	BAV2827	BAV2282	BAV2827	Putative membrane protein.	Multidrug resistance protein; Start codon not provided.	0.517
BAV2282	fliT	BAV2282	BAV1721	Putative membrane protein.	Flagellar protein.	0.583
BAV2282	rseA	BAV2282	BAV1126	Putative membrane protein.	sigma-E factor negative regulatory protein.	0.482