STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcAArginine deiminase; Also detected in the extracellular matrix by proteomics; cytoplasmic protein; arginine degradation [catalytic activity:L-arginine + H(2)O = l-citrulline + NH(3)] (402 aa)    
Predicted Functional Partners:
argF
Ornithine carbamoyltransferase, anabolic argf; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
  
 
 0.984
argG
Argininosuccinate synthase argg; Belongs to the argininosuccinate synthase family. Type 1 subfamily
   
 
 0.932
argH
Argininosuccinate lyase; Detected in the cytoplasmic fraction by 2D-LC- MS/MS; cytoplasmic protein; arginine biosynthesis (last step) [catalytic activity : n-(L-arginino)succinate = fumarate + l- arginine]
   
 
 0.918
MUL_4665
Conserved hypothetical protein; Cytoplasmic protein
  
    0.645
argR
Transcriptional regulator of arginine metabolism; Regulates arginine biosynthesis genes
  
  
 0.559
rocD
Ornithine aminotransferase rocd1 and rocd2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
     
 0.424
Your Current Organism:
Mycobacterium ulcerans
NCBI taxonomy Id: 362242
Other names: M. ulcerans Agy99, Mycobacterium ulcerans Agy99, Mycobacterium ulcerans str. Agy99, Mycobacterium ulcerans strain Agy99
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