Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LI0330 | amyA | LI0330 | LI0331 | Putative glycosyltransferase. | Alpha-amylase. | 0.949 |
LI0330 | glgP | LI0330 | LI0332 | Putative glycosyltransferase. | Carbohydrate phosphorylase family protein. | 0.925 |
LI0330 | glgX | LI0330 | LI0329 | Putative glycosyltransferase. | Glyen debranching enzyme. | 0.937 |
amyA | LI0330 | LI0331 | LI0330 | Alpha-amylase. | Putative glycosyltransferase. | 0.949 |
amyA | glgP | LI0331 | LI0332 | Alpha-amylase. | Carbohydrate phosphorylase family protein. | 0.992 |
amyA | glgX | LI0331 | LI0329 | Alpha-amylase. | Glyen debranching enzyme. | 0.936 |
glgP | LI0330 | LI0332 | LI0330 | Carbohydrate phosphorylase family protein. | Putative glycosyltransferase. | 0.925 |
glgP | amyA | LI0332 | LI0331 | Carbohydrate phosphorylase family protein. | Alpha-amylase. | 0.992 |
glgP | glgX | LI0332 | LI0329 | Carbohydrate phosphorylase family protein. | Glyen debranching enzyme. | 0.997 |
glgX | LI0330 | LI0329 | LI0330 | Glyen debranching enzyme. | Putative glycosyltransferase. | 0.937 |
glgX | amyA | LI0329 | LI0331 | Glyen debranching enzyme. | Alpha-amylase. | 0.936 |
glgX | glgP | LI0329 | LI0332 | Glyen debranching enzyme. | Carbohydrate phosphorylase family protein. | 0.997 |