STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107938093Protein transport protein Sec61 subunit alpha-like isoform X1. (165 aa)    
Predicted Functional Partners:
LOC107901301
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.963
rpl36
50S ribosomal protein L36, chloroplastic.
  
 
 0.963
LOC107904430
30S ribosomal protein S6-like.
   
 
 0.961
LOC107904716
Uncharacterized protein LOC107904716.
   
 
 0.961
LOC107891762
60S ribosomal protein L11-like; Belongs to the universal ribosomal protein uL5 family.
  
 
 0.957
LOC107901696
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 
 0.957
LOC107954523
50S ribosomal protein L5, chloroplastic-like.
  
 
 0.957
LOC107955268
50S ribosomal protein L5, chloroplastic-like.
  
 
 0.957
LOC107960236
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 
 0.957
LOC107889621
40S ribosomal protein S18 isoform X1; Belongs to the universal ribosomal protein uS13 family.
  
 
 0.951
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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