STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0129PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_0191 protein of unknown function DUF6, transmembrane. (302 aa)    
Predicted Functional Partners:
Pnap_0130
PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0192 major facilitator superfamily MFS_1.
       0.789
Pnap_0128
PFAM: glutathione peroxidase; KEGG: pol:Bpro_0190 glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.545
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.532
Pnap_0301
KEGG: pol:Bpro_0444 hypothetical protein.
  
     0.511
Pnap_0132
Hypothetical protein; KEGG: Dmel_CG32611; CG32611 gene product from transcript CG32611-RB.
       0.499
Pnap_0876
KEGG: pol:Bpro_1243 biotin synthesis protein BioC.
 
     0.447
Pnap_3087
PFAM: HemY domain protein; KEGG: pol:Bpro_3661 putative porphyrin biosynthesis related protein.
 
     0.443
Pnap_3389
TIGRFAM: MJ0042 family finger-like protein; KEGG: pol:Bpro_1102 zinc finger/thioredoxin putative.
  
     0.418
Pnap_2903
KEGG: pol:Bpro_2871 hypothetical protein.
  
     0.411
Pnap_0133
PFAM: DNA polymerase, beta domain protein region; KEGG: neu:NE2224 hypothetical protein.
       0.403
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.