STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0605Vanillin synthase / trans-feruloyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rfr:Rfer_0274 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)    
Predicted Functional Partners:
Pnap_1225
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3141 acyl-CoA dehydrogenase-like.
  
  0.936
Pnap_3285
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_2268 acyl-CoA dehydrogenase-like.
  
  0.936
Pnap_2940
PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_1632 3-hydroxybutyryl-CoA dehydrogenase.
 
 0.928
Pnap_1915
PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_2957 3-hydroxybutyryl-CoA dehydrogenase.
 
 0.875
Pnap_0606
PFAM: amidohydrolase 2; KEGG: rfr:Rfer_0275 amidohydrolase 2.
 
    0.851
Pnap_0796
trans-feruloyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_3112 AMP-dependent synthetase and ligase.
 
 
 0.819
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
    
 0.813
Pnap_0115
Methionine synthase (B12-dependent); PFAM: homocysteine S-methyltransferase; KEGG: pol:Bpro_0172 5-methyltetrahydrofolate--homocysteine S-methyltransferase.
     
 0.805
Pnap_0219
KEGG: rfr:Rfer_1327 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes.
   
 
  0.802
Pnap_2758
KEGG: pol:Bpro_1836 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes.
   
 
  0.802
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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